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To prepare for on-disk reverse indexes, remove a spot in
'offset_to_pack_pos()' that looks at the 'revindex' array in 'struct
packed_git'.
Even though this use of the revindex pointer is within pack-revindex.c,
this clean up is still worth doing. Since the 'revindex' pointer will be
NULL when reading from an on-disk reverse index (instead the
'revindex_data' pointer will be mmaped to the 'pack-*.rev' file), this
call-site would have to include a conditional to lookup the offset for
position 'mi' each iteration through the search.
So instead of open-coding 'pack_pos_to_offset()', call it directly from
within 'offset_to_pack_pos()'.
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Now that all spots outside of pack-revindex.c that reference 'struct
revindex_entry' directly have been removed, it is safe to hide the
implementation by moving it from pack-revindex.h to pack-revindex.c.
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Now that all 'find_revindex_position()' callers have been removed (and
converted to the more descriptive 'offset_to_pack_pos()'), it is almost
safe to get rid of 'find_revindex_position()' entirely. Almost, except
for the fact that 'offset_to_pack_pos()' calls
'find_revindex_position()'.
Inline 'find_revindex_position()' into 'offset_to_pack_pos()', and
then remove 'find_revindex_position()' entirely.
This is a straightforward refactoring with one minor snag.
'offset_to_pack_pos()' used to load the index before calling
'find_revindex_position()'. That means that by the time
'find_revindex_position()' starts executing, 'p->num_objects' can be
safely read. After inlining, be careful to not read 'p->num_objects'
until _after_ 'load_pack_revindex()' (which loads the index as a
side-effect) has been called.
Another small fix that is included is converting the upper- and
lower-bounds to be unsigned's instead of ints. This dates back to
92e5c77c37 (revindex: export new APIs, 2013-10-24)--ironically, the last
time we introduced new APIs here--but this unifies the types.
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Now that no callers of 'find_pack_revindex()' remain, remove the
function's declaration and implementation entirely.
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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In the next several patches, we will prepare for loading a reverse index
either in memory (mapping the inverse of the .idx's contents in-core),
or directly from a yet-to-be-introduced on-disk format. To prepare for
that, we'll introduce an API that avoids the caller explicitly indexing
the revindex pointer in the packed_git structure.
There are four ways to interact with the reverse index. Accordingly,
four functions will be exported from 'pack-revindex.h' by the time that
the existing API is removed. A caller may:
1. Load the pack's reverse index. This involves opening up the index,
generating an array, and then sorting it. Since opening the index
can fail, this function ('load_pack_revindex()') returns an int.
Accordingly, it takes only a single argument: the 'struct
packed_git' the caller wants to build a reverse index for.
This function is well-suited for both the current and new API.
Callers will have to continue to open the reverse index explicitly,
but this function will eventually learn how to detect and load a
reverse index from the on-disk format, if one exists. Otherwise, it
will fallback to generating one in memory from scratch.
2. Convert a pack position into an offset. This operation is now
called `pack_pos_to_offset()`. It takes a pack and a position, and
returns the corresponding off_t.
Any error simply calls BUG(), since the callers are not well-suited
to handle a failure and keep going.
3. Convert a pack position into an index position. Same as above; this
takes a pack and a position, and returns a uint32_t. This operation
is known as `pack_pos_to_index()`. The same thinking about error
conditions applies here as well.
4. Find the pack position for a given offset. This operation is now
known as `offset_to_pack_pos()`. It takes a pack, an offset, and a
pointer to a uint32_t where the position is written, if an object
exists at that offset. Otherwise, -1 is returned to indicate
failure.
Unlike some of the callers that used to access '->offset' and '->nr'
directly, the error checking around this call is somewhat more
robust. This is important since callers should always pass an offset
which points at the boundary of two objects. The API, unlike direct
access, enforces that that is the case.
This will become important in a subsequent patch where a caller
which does not but could check the return value treats the signed
`-1` from `find_revindex_position()` as an index into the 'revindex'
array.
Two design warts are carried over into the new API:
- Asking for the index position of an out-of-bounds object will result
in a BUG() (since no such object exists), but asking for the offset
of the non-existent object at the end of the pack returns the total
size of the pack.
This makes it convenient for callers who always want to take the
difference of two adjacent object's offsets (to compute the on-disk
size) but don't want to worry about boundaries at the end of the
pack.
- offset_to_pack_pos() lazily loads the reverse index, but
pack_pos_to_index() doesn't (callers of the former are well-suited
to handle errors, but callers of the latter are not).
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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A pack and its matching .idx file are limited to 2^32 objects, because
the pack format contains a 32-bit field to store the number of objects.
Hence we use uint32_t in the code.
But the byte count of even a .idx file can be much larger than that,
because it stores at least a hash and an offset for each object. So
using SHA-1, a v2 .idx file will cross the 4GB boundary at 153,391,650
objects. This confuses load_idx(), which computes the minimum size like
this:
unsigned long min_size = 8 + 4*256 + nr*(hashsz + 4 + 4) + hashsz + hashsz;
Even though min_size will be big enough on most 64-bit platforms, the
actual arithmetic is done as a uint32_t, resulting in a truncation. We
actually exceed that min_size, but then we do:
unsigned long max_size = min_size;
if (nr)
max_size += (nr - 1)*8;
to account for the variable-sized table. That computation doesn't
overflow quite so low, but with the truncation for min_size, we end up
with a max_size that is much smaller than our actual size. So we
complain that the idx is invalid, and can't find any of its objects.
We can fix this case by casting "nr" to a size_t, which will do the
multiplication in 64-bits (assuming you're on a 64-bit platform; this
will never work on a 32-bit system since we couldn't map the whole .idx
anyway). Likewise, we don't have to worry about further additions,
because adding a smaller number to a size_t will convert the other side
to a size_t.
A few notes:
- obviously we could just declare "nr" as a size_t in the first place
(and likewise, packed_git.num_objects). But it's conceptually a
uint32_t because of the on-disk format, and we correctly treat it
that way in other contexts that don't need to compute byte offsets
(e.g., iterating over the set of objects should and generally does
use a uint32_t). Switching to size_t would make all of those other
cases look wrong.
- it could be argued that the proper type is off_t to represent the
file offset. But in practice the .idx file must fit within memory,
because we mmap the whole thing. And the rest of the code (including
the idx_size variable we're comparing against) uses size_t.
- we'll add the same cast to the max_size arithmetic line. Even though
we're adding to a larger type, which will convert our result, the
multiplication is still done as a 32-bit value and can itself
overflow. I didn't check this with my test case, since it would need
an even larger pack (~530M objects), but looking at compiler output
shows that it works this way. The standard should agree, but I
couldn't find anything explicit in 6.3.1.8 ("usual arithmetic
conversions").
The case in load_idx() was the most immediate one that I was able to
trigger. After fixing it, looking up actual objects (including the very
last one in sha1 order) works in a test repo with 153,725,110 objects.
That's because bsearch_hash() works with uint32_t entry indices, and the
actual byte access:
int cmp = hashcmp(table + mi * stride, sha1);
is done with "stride" as a size_t, causing the uint32_t "mi" to be
promoted to a size_t. This is the way most code will access the index
data.
However, I audited all of the other byte-wise accesses of
packed_git.index_data, and many of the others are suspect (they are
similar to the max_size one, where we are adding to a properly sized
offset or directly to a pointer, but the multiplication in the
sub-expression can overflow). I didn't trigger any of these in practice,
but I believe they're potential problems, and certainly adding in the
cast is not going to hurt anything here.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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We can't create a pack revindex if we haven't actually looked at the
index. Normally we would never get as far as creating a revindex without
having already been looking in the pack, so this code never bothered to
double-check that pack->index_data had been loaded.
But with the new multi-pack-index feature, many code paths might not
load the individual pack .idx at all (they'd find objects via the midx
and then open the .pack, but not its index).
This can't yet be triggered in practice, because a bug in the midx code
means we accidentally open up the individual .idx files anyway. But in
preparation for fixing that, let's have the revindex code check that
everything it needs has been loaded.
In most cases this will just be a quick noop. But note that this does
introduce a possibility of error (if we have to open the index and it's
corrupt), so load_pack_revindex() now returns a result code, and callers
need to handle the error.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Signed-off-by: Shahzad Lone <shahzadlone@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Express the various constants used in terms of the_hash_algo.
While we're at it, fix a comment style issue as well.
Reviewed-by: Stefan Beller <sbeller@google.com>
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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In a process with multiple repositories open, packfile accessors
should be associated to a single repository and not shared globally.
Move packed_git and packed_git_mru into the_repository and adjust
callers to reflect this.
[nd: while at there, wrap access to these two fields in get_packed_git()
and get_packed_git_mru(). This allows us to lazily initialize these
fields without caller doing that explicitly]
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Jonathan Nieder <jrnieder@gmail.com>
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The pack-index version 2 format uses two 4-byte integers in
network-byte order to represent one 8-byte value. The current
implementation has several code clones for stitching these integers
together.
Use get_be64() to create an 8-byte integer from two 4-byte integers
represented this way.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Reviewed-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Apply the semantic patch swap.cocci to convert hand-rolled swaps to use
the macro SWAP. The resulting code is shorter and easier to read, the
object code is effectively unchanged.
The patch for object.c had to be hand-edited in order to preserve the
comment before the change; Coccinelle tried to eat it for some reason.
Signed-off-by: Rene Scharfe <l.s.r@web.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Add a semantic patch for converting certain calls of memcpy(3) to
COPY_ARRAY() and apply that transformation to the code base. The result
is
shorter and safer code. For now only consider calls where source and
destination have the same type, or in other words: easy cases.
Signed-off-by: Rene Scharfe <l.s.r@web.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Update various codepaths to avoid manually-counted malloc().
* jk/tighten-alloc: (22 commits)
ewah: convert to REALLOC_ARRAY, etc
convert ewah/bitmap code to use xmalloc
diff_populate_gitlink: use a strbuf
transport_anonymize_url: use xstrfmt
git-compat-util: drop mempcpy compat code
sequencer: simplify memory allocation of get_message
test-path-utils: fix normalize_path_copy output buffer size
fetch-pack: simplify add_sought_entry
fast-import: simplify allocation in start_packfile
write_untracked_extension: use FLEX_ALLOC helper
prepare_{git,shell}_cmd: use argv_array
use st_add and st_mult for allocation size computation
convert trivial cases to FLEX_ARRAY macros
use xmallocz to avoid size arithmetic
convert trivial cases to ALLOC_ARRAY
convert manual allocations to argv_array
argv-array: add detach function
add helpers for allocating flex-array structs
harden REALLOC_ARRAY and xcalloc against size_t overflow
tree-diff: catch integer overflow in combine_diff_path allocation
...
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Each of these cases can be converted to use ALLOC_ARRAY or
REALLOC_ARRAY, which has two advantages:
1. It automatically checks the array-size multiplication
for overflow.
2. It always uses sizeof(*array) for the element-size,
so that it can never go out of sync with the declared
type of the array.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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A pack_revindex struct has two elements: the revindex
entries themselves, and a pointer to the packed_git. We need
both to do lookups, because only the latter knows things
like the number of objects in the pack.
Now that packed_git contains the pack_revindex struct it's
just as easy to pass around the packed_git itself, and we do
not need the extra back-pointer.
We can instead just store the entries directly in the pack.
All functions which took a pack_revindex now just take a
packed_git. We still lazy-load in find_pack_revindex, so
most callers are unaffected.
The exception is the bitmap code, which computes the
revindex and caches the pointer when we load the bitmaps. We
can continue to load, drop the extra cache pointer, and just
access bitmap_git.pack.revindex directly.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The main entry point to the pack-revindex code is
find_pack_revindex(). This calls revindex_for_pack(), which
lazily computes and caches the revindex for the pack.
We store the cache in a very simple hash table. It's created
by init_pack_revindex(), which inserts an entry for every
packfile we know about, and we never grow or shrink the
hash. If we ever need the revindex for a pack that isn't in
the hash, we die() with an internal error.
This can lead to a race, because we may load more packs
after having called init_pack_revindex(). For example,
imagine we have one process which needs to look at the
revindex for a variety of objects (e.g., cat-file's
"%(objectsize:disk)" format). Simultaneously, git-gc is
running, which is doing a `git repack -ad`. We might hit a
sequence like:
1. We need the revidx for some packed object. We call
find_pack_revindex() and end up in init_pack_revindex()
to create the hash table for all packs we know about.
2. We look up another object and can't find it, because
the repack has removed the pack it's in. We re-scan the
pack directory and find a new pack containing the
object. It gets added to our packed_git list.
3. We call find_pack_revindex() for the new object, which
hits revindex_for_pack() for our new pack. It can't
find the packed_git in the revindex hash, and dies.
You could also replace the `repack` above with a push or
fetch to create a new pack, though these are less likely
(you would have to somehow learn about the new objects to
look them up).
Prior to 1a6d8b9 (do not discard revindex when re-preparing
packfiles, 2014-01-15), this was safe, as we threw away the
revindex whenever we re-scanned the pack directory (and thus
re-created the revindex hash on the fly). However, we don't
want to simply revert that commit, as it was solving a
different race.
So we have a few options:
- We can fix the race in 1a6d8b9 differently, by having
the bitmap code look in the revindex hash instead of
caching the pointer. But this would introduce a lot of
extra hash lookups for common bitmap operations.
- We could teach the revindex to dynamically add new packs
to the hash table. This would perform the same, but
would mean adding extra code to the revindex hash (which
currently cannot be resized at all).
- We can get rid of the hash table entirely. There is
exactly one revindex per pack, so we can just store it
in the packed_git struct. Since it's initialized lazily,
it does not add to the startup cost.
This is the best of both worlds: less code and fewer
hash table lookups. The original code likely avoided
this in the name of encapsulation. But the packed_git
and reverse_index code are fairly intimate already, so
it's not much of a loss.
This patch implements the final option. It's a minimal
conversion that retains the pack_revindex struct. No callers
need to change, and we can do further cleanup in a follow-on
patch.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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When calculating hashes from pointers, it actually makes sense to cut
off the most significant bits. In that case, said warning does not make
a whole lot of sense.
So let's just work around it by casting the pointer first to intptr_t
and then casting up/down to the final integral type.
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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xcalloc() takes two arguments: the number of elements and their size.
init_pack_revindex() passes the arguments in reverse order, passing the
size of a pack_revindex, followed by the number to allocate.
Rearrange them so they are in the correct order.
Signed-off-by: Brian Gesiak <modocache@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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When an object lookup fails, we re-read the objects/pack
directory to pick up any new packfiles that may have been
created since our last read. We also discard any pack
revindex structs we've allocated.
The discarding is a problem for the pack-bitmap code, which keeps
a pointer to the revindex for the bitmapped pack. After the
discard, the pointer is invalid, and we may read free()d
memory.
Other revindex users do not keep a bare pointer to the
revindex; instead, they always access it through
revindex_for_pack(), which lazily builds the revindex. So
one solution is to teach the pack-bitmap code a similar
trick. It would be slightly less efficient, but probably not
all that noticeable.
However, it turns out this discarding is not actually
necessary. When we call reprepare_packed_git, we do not
throw away our old pack list. We keep the existing entries,
and only add in new ones. So there is no safety problem; we
will still have the pack struct that matches each revindex.
The packfile itself may go away, of course, but we are
already prepared to handle that, and it may happen outside
of reprepare_packed_git anyway.
Throwing away the revindex may save some RAM if the pack
never gets reused (about 12 bytes per object). But it also
wastes some CPU time (to regenerate the index) if the pack
does get reused. It's hard to say which is more valuable,
but in either case, it happens very rarely (only when we
race with a simultaneous repack). Just leaving the revindex
in place is simple and safe both for current and future
code.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Allow users to efficiently lookup consecutive entries that are expected
to be found on the same revindex by exporting `find_revindex_position`:
this function takes a pointer to revindex itself, instead of looking up
the proper revindex for a given packfile on each call.
Signed-off-by: Vicent Marti <tanoku@gmail.com>
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The pack revindex stores the offsets of the objects in the
pack in sorted order, allowing us to easily find the on-disk
size of each object. To compute it, we populate an array
with the offsets from the sha1-sorted idx file, and then use
qsort to order it by offsets.
That does O(n log n) offset comparisons, and profiling shows
that we spend most of our time in cmp_offset. However, since
we are sorting on a simple off_t, we can use numeric sorts
that perform better. A radix sort can run in O(k*n), where k
is the number of "digits" in our number. For a 64-bit off_t,
using 16-bit "digits" gives us k=4.
On the linux.git repo, with about 3M objects to sort, this
yields a 400% speedup. Here are the best-of-five numbers for
running
echo HEAD | git cat-file --batch-check="%(objectsize:disk)
on a fully packed repository, which is dominated by time
spent building the pack revindex:
before after
real 0m0.834s 0m0.204s
user 0m0.788s 0m0.164s
sys 0m0.040s 0m0.036s
This matches our algorithmic expectations. log(3M) is ~21.5,
so a traditional sort is ~21.5n. Our radix sort runs in k*n,
where k is the number of radix digits. In the worst case,
this is k=4 for a 64-bit off_t, but we can quit early when
the largest value to be sorted is smaller. For any
repository under 4G, k=2. Our algorithm makes two passes
over the list per radix digit, so we end up with 4n. That
should yield ~5.3x speedup. We see 4x here; the difference
is probably due to the extra bucket book-keeping the radix
sort has to do.
On a smaller repo, the difference is less impressive, as
log(n) is smaller. For git.git, with 173K objects (but still
k=2), we see a 2.7x improvement:
before after
real 0m0.046s 0m0.017s
user 0m0.036s 0m0.012s
sys 0m0.008s 0m0.000s
On even tinier repos (e.g., a few hundred objects), the
speedup goes away entirely, as the small advantage of the
radix sort gets erased by the book-keeping costs (and at
those sizes, the cost to generate the the rev-index gets
lost in the noise anyway).
Signed-off-by: Jeff King <peff@peff.net>
Reviewed-by: Brandon Casey <drafnel@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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A packfile may have up to 2^32-1 objects in it, so the
"right" data type to use is uint32_t. We currently use a
signed int, which means that we may behave incorrectly for
packfiles with more than 2^31-1 objects on 32-bit systems.
Nobody has noticed because having 2^31 objects is pretty
insane. The linux.git repo has on the order of 2^22 objects,
which is hundreds of times smaller than necessary to trigger
the bug.
Let's bump this up to an "unsigned". On 32-bit systems, this
gives us the correct data-type, and on 64-bit systems, it is
probably more efficient to use the native "unsigned" than a
true uint32_t.
While we're at it, we can fix the binary search not to
overflow in such a case if our unsigned is 32 bits.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Signed-off-by: Pierre Habouzit <madcoder@debian.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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It currently calls die() whenever given offset is not found thinking
that such thing should never happen. But this offset may come from a
corrupted pack whych _could_ happen and not be found. Callers should
deal with this possibility gracefully instead.
Signed-off-by: Nicolas Pitre <nico@cam.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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This is needed to fix verify-pack -v with multiple pack arguments.
Also, in theory, revindex data (if any) must be discarded whenever
reprepare_packed_git() is called. In practice this is hard to trigger
though.
Signed-off-by: Nicolas Pitre <nico@cam.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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This makes life much easier for next patch, as well as being more efficient
when the revindex is actually not used.
Signed-off-by: Nicolas Pitre <nico@cam.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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No functional change. This is needed to fix verify-pack in a later patch.
Signed-off-by: Nicolas Pitre <nico@cam.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Taylor Blau
Jeff King
Shahzad Lone
brian m. carlson
Stefan Beller
Derrick Stolee
René Scharfe
Junio C Hamano
Johannes Schindelin
Brian Gesiak
Vicent Marti
Pierre Habouzit
Nicolas Pitre