Age | Commit message (Collapse) | Author | Files | Lines |
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spatch transformation to replace boolean uses of !hashcmp() to
newly introduced oideq() is added, and applied, to regain
performance lost due to support of multiple hash algorithms.
* jk/cocci:
show_dirstat: simplify same-content check
read-cache: use oideq() in ce_compare functions
convert hashmap comparison functions to oideq()
convert "hashcmp() != 0" to "!hasheq()"
convert "oidcmp() != 0" to "!oideq()"
convert "hashcmp() == 0" to hasheq()
convert "oidcmp() == 0" to oideq()
introduce hasheq() and oideq()
coccinelle: use <...> for function exclusion
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Using the more restrictive oideq() should, in the long run,
give the compiler more opportunities to optimize these
callsites. For now, this conversion should be a complete
noop with respect to the generated code.
The result is also perhaps a little more readable, as it
avoids the "zero is equal" idiom. Since it's so prevalent in
C, I think seasoned programmers tend not to even notice it
anymore, but it can sometimes make for awkward double
negations (e.g., we can drop a few !!oidcmp() instances
here).
This patch was generated almost entirely by the included
coccinelle patch. This mechanical conversion should be
completely safe, because we check explicitly for cases where
oidcmp() is compared to 0, which is what oideq() is doing
under the hood. Note that we don't have to catch "!oidcmp()"
separately; coccinelle's standard isomorphisms make sure the
two are treated equivalently.
I say "almost" because I did hand-edit the coccinelle output
to fix up a few style violations (it mostly keeps the
original formatting, but sometimes unwraps long lines).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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These methods are now declared in commit-reach.h. Remove them from
commit.h and add new include statements in all files that require these
declarations.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Add a repository argument to allow callers of lookup_commit_reference
to be more specific about which repository to handle. This is a small
mechanical change; it doesn't change the implementation to handle
repositories other than the_repository yet.
As with the previous commits, use a macro to catch callers passing a
repository other than the_repository at compile time.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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* sb/object-store-grafts:
commit: allow lookup_commit_graft to handle arbitrary repositories
commit: allow prepare_commit_graft to handle arbitrary repositories
shallow: migrate shallow information into the object parser
path.c: migrate global git_path_* to take a repository argument
cache: convert get_graft_file to handle arbitrary repositories
commit: convert read_graft_file to handle arbitrary repositories
commit: convert register_commit_graft to handle arbitrary repositories
commit: convert commit_graft_pos() to handle arbitrary repositories
shallow: add repository argument to is_repository_shallow
shallow: add repository argument to check_shallow_file_for_update
shallow: add repository argument to register_shallow
shallow: add repository argument to set_alternate_shallow_file
commit: add repository argument to lookup_commit_graft
commit: add repository argument to prepare_commit_graft
commit: add repository argument to read_graft_file
commit: add repository argument to register_commit_graft
commit: add repository argument to commit_graft_pos
object: move grafts to object parser
object-store: move object access functions to object-store.h
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Developer support update, by using BUG() macro instead of die() to
mark codepaths that should not happen more clearly.
* js/use-bug-macro:
BUG_exit_code: fix sparse "symbol not declared" warning
Convert remaining die*(BUG) messages
Replace all die("BUG: ...") calls by BUG() ones
run-command: use BUG() to report bugs, not die()
test-tool: help verifying BUG() code paths
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The code has been taught to use the duplicated information stored
in the commit-graph file to learn the tree object name for a commit
to avoid opening and parsing the commit object when it makes sense
to do so.
* ds/lazy-load-trees:
coccinelle: avoid wrong transformation suggestions from commit.cocci
commit-graph: lazy-load trees for commits
treewide: replace maybe_tree with accessor methods
commit: create get_commit_tree() method
treewide: rename tree to maybe_tree
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This should make these functions easier to find and cache.h less
overwhelming to read.
In particular, this moves:
- read_object_file
- oid_object_info
- write_object_file
As a result, most of the codebase needs to #include object-store.h.
In this patch the #include is only added to files that would fail to
compile otherwise. It would be better to #include wherever
identifiers from the header are used. That can happen later
when we have better tooling for it.
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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In d8193743e08 (usage.c: add BUG() function, 2017-05-12), a new macro
was introduced to use for reporting bugs instead of die(). It was then
subsequently used to convert one single caller in 588a538ae55
(setup_git_env: convert die("BUG") to BUG(), 2017-05-12).
The cover letter of the patch series containing this patch
(cf 20170513032414.mfrwabt4hovujde2@sigill.intra.peff.net) is not
terribly clear why only one call site was converted, or what the plan
is for other, similar calls to die() to report bugs.
Let's just convert all remaining ones in one fell swoop.
This trick was performed by this invocation:
sed -i 's/die("BUG: /BUG("/g' $(git grep -l 'die("BUG' \*.c)
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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In anticipation of making trees load lazily, create a Coccinelle
script (contrib/coccinelle/commit.cocci) to ensure that all
references to the 'maybe_tree' member of struct commit are either
mutations or accesses through get_commit_tree() or
get_commit_tree_oid().
Apply the Coccinelle script to create the rest of the patch.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Using the commit-graph file to walk commit history removes the large
cost of parsing commits during the walk. This exposes a performance
issue: lookup_tree() takes a large portion of the computation time,
even when Git never uses those trees.
In anticipation of lazy-loading these trees, rename the 'tree' member
of struct commit to 'maybe_tree'. This serves two purposes: it hints
at the future role of possibly being NULL even if the commit has a
valid tree, and it allows for unambiguous transformation from simple
member access (i.e. commit->maybe_tree) to method access.
Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert read_sha1_file to take a pointer to struct object_id and rename
it read_object_file. Do the same for read_sha1_file_extended.
Convert one use in grep.c to use the new function without any other code
change, since the pointer being passed is a void pointer that is already
initialized with a pointer to struct object_id. Update the declaration
and definitions of the modified functions, and apply the following
semantic patch to convert the remaining callers:
@@
expression E1, E2, E3;
@@
- read_sha1_file(E1.hash, E2, E3)
+ read_object_file(&E1, E2, E3)
@@
expression E1, E2, E3;
@@
- read_sha1_file(E1->hash, E2, E3)
+ read_object_file(E1, E2, E3)
@@
expression E1, E2, E3, E4;
@@
- read_sha1_file_extended(E1.hash, E2, E3, E4)
+ read_object_file_extended(&E1, E2, E3, E4)
@@
expression E1, E2, E3, E4;
@@
- read_sha1_file_extended(E1->hash, E2, E3, E4)
+ read_object_file_extended(E1, E2, E3, E4)
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert the definitions and declarations of commit_tree and
commit_tree_extended to use struct object_id and adjust all usages of
these functions.
Signed-off-by: Patryk Obara <patryk.obara@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Switch the uses of empty_tree_oid and empty_blob_oid to use the
current_hash abstraction that represents the current hash algorithm in
use.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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A single-word "unsigned flags" in the diff options is being split
into a structure with many bitfields.
* bw/diff-opt-impl-to-bitfields:
diff: make struct diff_flags members lowercase
diff: remove DIFF_OPT_CLR macro
diff: remove DIFF_OPT_SET macro
diff: remove DIFF_OPT_TST macro
diff: remove touched flags
diff: add flag to indicate textconv was set via cmdline
diff: convert flags to be stored in bitfields
add, reset: use DIFF_OPT_SET macro to set a diff flag
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Now that the flags stored in struct diff_flags are being accessed
directly and not through macros, change all struct members from being
uppercase to lowercase.
This conversion is done using the following semantic patch:
@@
expression E;
@@
- E.RECURSIVE
+ E.recursive
@@
expression E;
@@
- E.TREE_IN_RECURSIVE
+ E.tree_in_recursive
@@
expression E;
@@
- E.BINARY
+ E.binary
@@
expression E;
@@
- E.TEXT
+ E.text
@@
expression E;
@@
- E.FULL_INDEX
+ E.full_index
@@
expression E;
@@
- E.SILENT_ON_REMOVE
+ E.silent_on_remove
@@
expression E;
@@
- E.FIND_COPIES_HARDER
+ E.find_copies_harder
@@
expression E;
@@
- E.FOLLOW_RENAMES
+ E.follow_renames
@@
expression E;
@@
- E.RENAME_EMPTY
+ E.rename_empty
@@
expression E;
@@
- E.HAS_CHANGES
+ E.has_changes
@@
expression E;
@@
- E.QUICK
+ E.quick
@@
expression E;
@@
- E.NO_INDEX
+ E.no_index
@@
expression E;
@@
- E.ALLOW_EXTERNAL
+ E.allow_external
@@
expression E;
@@
- E.EXIT_WITH_STATUS
+ E.exit_with_status
@@
expression E;
@@
- E.REVERSE_DIFF
+ E.reverse_diff
@@
expression E;
@@
- E.CHECK_FAILED
+ E.check_failed
@@
expression E;
@@
- E.RELATIVE_NAME
+ E.relative_name
@@
expression E;
@@
- E.IGNORE_SUBMODULES
+ E.ignore_submodules
@@
expression E;
@@
- E.DIRSTAT_CUMULATIVE
+ E.dirstat_cumulative
@@
expression E;
@@
- E.DIRSTAT_BY_FILE
+ E.dirstat_by_file
@@
expression E;
@@
- E.ALLOW_TEXTCONV
+ E.allow_textconv
@@
expression E;
@@
- E.TEXTCONV_SET_VIA_CMDLINE
+ E.textconv_set_via_cmdline
@@
expression E;
@@
- E.DIFF_FROM_CONTENTS
+ E.diff_from_contents
@@
expression E;
@@
- E.DIRTY_SUBMODULES
+ E.dirty_submodules
@@
expression E;
@@
- E.IGNORE_UNTRACKED_IN_SUBMODULES
+ E.ignore_untracked_in_submodules
@@
expression E;
@@
- E.IGNORE_DIRTY_SUBMODULES
+ E.ignore_dirty_submodules
@@
expression E;
@@
- E.OVERRIDE_SUBMODULE_CONFIG
+ E.override_submodule_config
@@
expression E;
@@
- E.DIRSTAT_BY_LINE
+ E.dirstat_by_line
@@
expression E;
@@
- E.FUNCCONTEXT
+ E.funccontext
@@
expression E;
@@
- E.PICKAXE_IGNORE_CASE
+ E.pickaxe_ignore_case
@@
expression E;
@@
- E.DEFAULT_FOLLOW_RENAMES
+ E.default_follow_renames
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Remove the `DIFF_OPT_SET` macro and instead set the flags directly.
This conversion is done using the following semantic patch:
@@
expression E;
identifier fld;
@@
- DIFF_OPT_SET(&E, fld)
+ E.flags.fld = 1
@@
type T;
T *ptr;
identifier fld;
@@
- DIFF_OPT_SET(ptr, fld)
+ ptr->flags.fld = 1
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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All but two of the call sites already have parameters using the hash
parameter of struct object_id, so convert them to take a pointer to the
struct directly. Also convert refs_read_refs_full, the underlying
implementation.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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We call write_in_full() with a size that we know is greater
than zero. The return value can never be zero, then, since
write_in_full() converts such a failed write() into ENOSPC
and returns -1. We can just drop this branch of the error
handling entirely.
Suggested-by: Jonathan Nieder <jrnieder@gmail.com>
Signed-off-by: Jeff King <peff@peff.net>
Reviewed-by: Jonathan Nieder <jrnieder@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Many codepaths did not diagnose write failures correctly when disks
go full, due to their misuse of write_in_full() helper function,
which have been corrected.
* jk/write-in-full-fix:
read_pack_header: handle signed/unsigned comparison in read result
config: flip return value of store_write_*()
notes-merge: use ssize_t for write_in_full() return value
pkt-line: check write_in_full() errors against "< 0"
convert less-trivial versions of "write_in_full() != len"
avoid "write_in_full(fd, buf, len) != len" pattern
get-tar-commit-id: check write_in_full() return against 0
config: avoid "write_in_full(fd, buf, len) < len" pattern
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We store the return value of write_in_full() in a long,
though the return is actually an ssize_t. This probably
doesn't matter much in practice (since the buffer size is
alredy an unsigned long), but it might if the size if
between what can be represented in "long" and "unsigned
long", and if your size_t is larger than a "long" (as it is
on 64-bit Windows).
Signed-off-by: Jeff King <peff@peff.net>
Reviewed-by: Jonathan Nieder <jrnieder@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Message and doc updates.
* ma/up-to-date:
treewide: correct several "up-to-date" to "up to date"
Documentation/user-manual: update outdated example output
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Follow the Oxford style, which says to use "up-to-date" before the noun,
but "up to date" after it. Don't change plumbing (specifically
send-pack.c, but transport.c (git push) also has the same string).
This was produced by grepping for "up-to-date" and "up to date". It
turned out we only had to edit in one direction, removing the hyphens.
Fix a typo in Documentation/git-diff-index.txt while we're there.
Reported-by: Jeffrey Manian <jeffrey.manian@gmail.com>
Reported-by: STEVEN WHITE <stevencharleswhitevoices@gmail.com>
Signed-off-by: Martin Ågren <martin.agren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert all remaining callers as well.
Signed-off-by: Patryk Obara <patryk.obara@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Simplify the code for moving members inside of an array and make it more
robust by using the helper macro MOVE_ARRAY. It calculates the size
based on the specified number of elements for us and supports NULL
pointers when that number is zero. Raw memmove(3) calls with NULL can
cause the compiler to (over-eagerly) optimize out later NULL checks.
This patch was generated with contrib/coccinelle/array.cocci and spatch
(Coccinelle).
Signed-off-by: Rene Scharfe <l.s.r@web.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert notes_merge and notes_merge_commit to use struct object_id.
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert add_note, get_note, and copy_note to take struct object_id.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Brandon Williams <bmwill@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert lookup_commit, lookup_commit_or_die,
lookup_commit_reference, and lookup_commit_reference_gently to take
struct object_id arguments.
Introduce a temporary in parse_object buffer in order to convert this
function. This is required since in order to convert parse_object and
parse_object_buffer, lookup_commit_reference_gently and
lookup_commit_or_die would need to be converted. Not introducing a
temporary would therefore require that lookup_commit_or_die take a
struct object_id *, but lookup_commit would take unsigned char *,
leaving a confusing and hard-to-use interface.
parse_object_buffer will lose this temporary in a later patch.
This commit was created with manual changes to commit.c, commit.h, and
object.c, plus the following semantic patch:
@@
expression E1, E2;
@@
- lookup_commit_reference_gently(E1.hash, E2)
+ lookup_commit_reference_gently(&E1, E2)
@@
expression E1, E2;
@@
- lookup_commit_reference_gently(E1->hash, E2)
+ lookup_commit_reference_gently(E1, E2)
@@
expression E1;
@@
- lookup_commit_reference(E1.hash)
+ lookup_commit_reference(&E1)
@@
expression E1;
@@
- lookup_commit_reference(E1->hash)
+ lookup_commit_reference(E1)
@@
expression E1;
@@
- lookup_commit(E1.hash)
+ lookup_commit(&E1)
@@
expression E1;
@@
- lookup_commit(E1->hash)
+ lookup_commit(E1)
@@
expression E1, E2;
@@
- lookup_commit_or_die(E1.hash, E2)
+ lookup_commit_or_die(&E1, E2)
@@
expression E1, E2;
@@
- lookup_commit_or_die(E1->hash, E2)
+ lookup_commit_or_die(E1, E2)
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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There are a small number of remaining callers of lookup_commit_reference
and lookup_commit_reference_gently that still need to be converted to
struct object_id. Convert these.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Writing directly into the strbuf avoids a useless copy of
the data, and dropping calls to git_path() makes it easier
to audit for dangerous calls.
Note that git_path() does an implicit strbuf_reset(), but in
each of these cases we were either already doing that reset,
or writing into a fresh strbuf anyway.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Even more i18n.
* va/i18n-more:
i18n: stash: mark messages for translation
i18n: notes-merge: mark die messages for translation
i18n: ident: mark hint for translation
i18n: i18n: diff: mark die messages for translation
i18n: connect: mark die messages for translation
i18n: commit: mark message for translation
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Update test to reflect changes.
Signed-off-by: Vasco Almeida <vascomalmeida@sapo.pt>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Since all of its callers have been updated, convert read_mmblob to take
a pointer to struct object_id.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert each of this structure's members from an unsigned char array to
a struct object_id.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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"git notes merge" had a code to see if a path exists (and fails if
it does) and then open the path for writing (when it doesn't).
Replace it with open with O_EXCL.
* rs/notes-merge-no-toctou:
notes-merge: use O_EXCL to avoid overwriting existing files
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Conversion from unsigned char sha1[20] to struct object_id
continues.
* bc/cocci:
diff: convert prep_temp_blob() to struct object_id
merge-recursive: convert merge_recursive_generic() to object_id
merge-recursive: convert leaf functions to use struct object_id
merge-recursive: convert struct merge_file_info to object_id
merge-recursive: convert struct stage_data to use object_id
diff: rename struct diff_filespec's sha1_valid member
diff: convert struct diff_filespec to struct object_id
coccinelle: apply object_id Coccinelle transformations
coccinelle: convert hashcpy() with null_sha1 to hashclr()
contrib/coccinelle: add basic Coccinelle transforms
hex: add oid_to_hex_r()
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Use the open(2) flag O_EXCL to ensure the file doesn't already exist
instead of (racily) calling stat(2) through file_exists(). While at it
switch to xopen() to reduce code duplication and get more consistent
error messages.
Signed-off-by: Rene Scharfe <l.s.r@web.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert struct diff_filespec's sha1 member to use a struct object_id
called "oid" instead. The following Coccinelle semantic patch was used
to implement this, followed by the transformations in object_id.cocci:
@@
struct diff_filespec o;
@@
- o.sha1
+ o.oid.hash
@@
struct diff_filespec *p;
@@
- p->sha1
+ p->oid.hash
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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The function takes a pointer to a pathspec structure, and releases
the resources held by it, but does not free() the structure itself.
Such a function should be called "clear", not "free".
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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Convert all instances of get_object_hash to use an appropriate reference
to the hash member of the oid member of struct object. This provides no
functional change, as it is essentially a macro substitution.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Jeff King <peff@peff.net>
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struct object is one of the major data structures dealing with object
IDs. Convert it to use struct object_id instead of an unsigned char
array. Convert get_object_hash to refer to the new member as well.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Jeff King <peff@peff.net>
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Convert most instances where the sha1 member of struct object is
dereferenced to use get_object_hash. Most instances that are passed to
functions that have versions taking struct object_id, such as
get_sha1_hex/get_oid_hex, or instances that can be trivially converted
to use struct object_id instead, are not converted.
Signed-off-by: brian m. carlson <sandals@crustytoothpaste.net>
Signed-off-by: Jeff King <peff@peff.net>
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Because git_path uses a static buffer that is shared with
calls to git_path, mkpath, etc, it can be dangerous to
assign the result to a variable or pass it to a non-trivial
function. The value may change unexpectedly due to other
calls.
None of the cases changed here has a known bug, but they're
worth converting away from git_path because:
1. It's easy to use git_pathdup in these cases.
2. They use constructs (like assignment) that make it
hard to tell whether they're safe or not.
The extra malloc overhead should be trivial, as an
allocation should be an order of magnitude cheaper than a
system call (which we are clearly about to make, since we
are constructing a filename). The real cost is that we must
remember to free the result.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
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A replacement for contrib/workdir/git-new-workdir that does not
rely on symbolic links and make sharing of objects and refs safer
by making the borrowee and borrowers aware of each other.
* nd/multiple-work-trees: (41 commits)
prune --worktrees: fix expire vs worktree existence condition
t1501: fix test with split index
t2026: fix broken &&-chain
t2026 needs procondition SANITY
git-checkout.txt: a note about multiple checkout support for submodules
checkout: add --ignore-other-wortrees
checkout: pass whole struct to parse_branchname_arg instead of individual flags
git-common-dir: make "modules/" per-working-directory directory
checkout: do not fail if target is an empty directory
t2025: add a test to make sure grafts is working from a linked checkout
checkout: don't require a work tree when checking out into a new one
git_path(): keep "info/sparse-checkout" per work-tree
count-objects: report unused files in $GIT_DIR/worktrees/...
gc: support prune --worktrees
gc: factor out gc.pruneexpire parsing code
gc: style change -- no SP before closing parenthesis
checkout: clean up half-prepared directories in --to mode
checkout: reject if the branch is already checked out elsewhere
prune: strategies for linked checkouts
checkout: support checking out into a new working directory
...
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The get_merge_bases*() API was easy to misuse by careless
copy&paste coders, leaving object flags tainted in the commits that
needed to be traversed.
* jc/merge-bases:
get_merge_bases(): always clean-up object flags
bisect: clean flags after checking merge bases
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