1 files changed, 111 insertions, 62 deletions

diff --git a/unpack-trees.c b/unpack-trees.c
index 2de6368b06..4c3191b947 100644
--- a/unpack-trees.c
+++ b/unpack-trees.c
@@ -275,9 +275,9 @@ static int check_submodule_move_head(const struct cache_entry *ce,
 }
 
 /*
- * Preform the loading of the repository's gitmodules file.  This function is
+ * Perform the loading of the repository's gitmodules file.  This function is
  * used by 'check_update()' to perform loading of the gitmodules file in two
- * differnt situations:
+ * different situations:
  * (1) before removing entries from the working tree if the gitmodules file has
  *     been marked for removal.  This situation is specified by 'state' == NULL.
  * (2) before checking out entries to the working tree if the gitmodules file
@@ -291,11 +291,11 @@ static void load_gitmodules_file(struct index_state *index,
 	if (pos >= 0) {
 		struct cache_entry *ce = index->cache[pos];
 		if (!state && ce->ce_flags & CE_WT_REMOVE) {
-			repo_read_gitmodules(the_repository);
+			repo_read_gitmodules(the_repository, 0);
 		} else if (state && (ce->ce_flags & CE_UPDATE)) {
 			submodule_free(the_repository);
 			checkout_entry(ce, state, NULL, NULL);
-			repo_read_gitmodules(the_repository);
+			repo_read_gitmodules(the_repository, 0);
 		}
 	}
 }
@@ -371,16 +371,22 @@ static int check_updates(struct unpack_trees_options *o)
 	state.quiet = 1;
 	state.refresh_cache = 1;
 	state.istate = index;
+	clone_checkout_metadata(&state.meta, &o->meta, NULL);
+
+	if (!o->update || o->dry_run) {
+		remove_marked_cache_entries(index, 0);
+		trace_performance_leave("check_updates");
+		return 0;
+	}
 
 	if (o->clone)
 		setup_collided_checkout_detection(&state, index);
 
 	progress = get_progress(o);
 
-	if (o->update)
-		git_attr_set_direction(GIT_ATTR_CHECKOUT);
+	git_attr_set_direction(GIT_ATTR_CHECKOUT);
 
-	if (should_update_submodules() && o->update && !o->dry_run)
+	if (should_update_submodules())
 		load_gitmodules_file(index, NULL);
 
 	for (i = 0; i < index->cache_nr; i++) {
@@ -388,18 +394,18 @@ static int check_updates(struct unpack_trees_options *o)
 
 		if (ce->ce_flags & CE_WT_REMOVE) {
 			display_progress(progress, ++cnt);
-			if (o->update && !o->dry_run)
-				unlink_entry(ce);
+			unlink_entry(ce);
 		}
 	}
+
 	remove_marked_cache_entries(index, 0);
 	remove_scheduled_dirs();
 
-	if (should_update_submodules() && o->update && !o->dry_run)
+	if (should_update_submodules())
 		load_gitmodules_file(index, &state);
 
 	enable_delayed_checkout(&state);
-	if (has_promisor_remote() && o->update && !o->dry_run) {
+	if (has_promisor_remote()) {
 		/*
 		 * Prefetch the objects that are to be checked out in the loop
 		 * below.
@@ -417,9 +423,8 @@ static int check_updates(struct unpack_trees_options *o)
 				continue;
 			oid_array_append(&to_fetch, &ce->oid);
 		}
-		if (to_fetch.nr)
-			promisor_remote_get_direct(the_repository,
-						   to_fetch.oid, to_fetch.nr);
+		promisor_remote_get_direct(the_repository,
+					   to_fetch.oid, to_fetch.nr);
 		oid_array_clear(&to_fetch);
 	}
 	for (i = 0; i < index->cache_nr; i++) {
@@ -431,15 +436,12 @@ static int check_updates(struct unpack_trees_options *o)
 				    ce->name);
 			display_progress(progress, ++cnt);
 			ce->ce_flags &= ~CE_UPDATE;
-			if (o->update && !o->dry_run) {
-				errs |= checkout_entry(ce, &state, NULL, NULL);
-			}
+			errs |= checkout_entry(ce, &state, NULL, NULL);
 		}
 	}
 	stop_progress(&progress);
 	errs |= finish_delayed_checkout(&state, NULL);
-	if (o->update)
-		git_attr_set_direction(GIT_ATTR_CHECKIN);
+	git_attr_set_direction(GIT_ATTR_CHECKIN);
 
 	if (o->clone)
 		report_collided_checkout(index);
@@ -694,9 +696,11 @@ static int index_pos_by_traverse_info(struct name_entry *names,
 	if (pos >= 0)
 		BUG("This is a directory and should not exist in index");
 	pos = -pos - 1;
-	if (!starts_with(o->src_index->cache[pos]->name, name.buf) ||
+	if (pos >= o->src_index->cache_nr ||
+	    !starts_with(o->src_index->cache[pos]->name, name.buf) ||
 	    (pos > 0 && starts_with(o->src_index->cache[pos-1]->name, name.buf)))
-		BUG("pos must point at the first entry in this directory");
+		BUG("pos %d doesn't point to the first entry of %s in index",
+		    pos, name.buf);
 	strbuf_release(&name);
 	return pos;
 }
@@ -1269,7 +1273,8 @@ static int clear_ce_flags_1(struct index_state *istate,
 			    struct strbuf *prefix,
 			    int select_mask, int clear_mask,
 			    struct pattern_list *pl,
-			    enum pattern_match_result default_match);
+			    enum pattern_match_result default_match,
+			    int progress_nr);
 
 /* Whole directory matching */
 static int clear_ce_flags_dir(struct index_state *istate,
@@ -1278,20 +1283,23 @@ static int clear_ce_flags_dir(struct index_state *istate,
 			      char *basename,
 			      int select_mask, int clear_mask,
 			      struct pattern_list *pl,
-			      enum pattern_match_result default_match)
+			      enum pattern_match_result default_match,
+			      int progress_nr)
 {
 	struct cache_entry **cache_end;
 	int dtype = DT_DIR;
 	int rc;
-	enum pattern_match_result ret;
-	ret = path_matches_pattern_list(prefix->buf, prefix->len,
-					basename, &dtype, pl, istate);
+	enum pattern_match_result ret, orig_ret;
+	orig_ret = path_matches_pattern_list(prefix->buf, prefix->len,
+					     basename, &dtype, pl, istate);
 
 	strbuf_addch(prefix, '/');
 
 	/* If undecided, use matching result of parent dir in defval */
-	if (ret == UNDECIDED)
+	if (orig_ret == UNDECIDED)
 		ret = default_match;
+	else
+		ret = orig_ret;
 
 	for (cache_end = cache; cache_end != cache + nr; cache_end++) {
 		struct cache_entry *ce = *cache_end;
@@ -1299,17 +1307,24 @@ static int clear_ce_flags_dir(struct index_state *istate,
 			break;
 	}
 
-	/*
-	 * TODO: check pl, if there are no patterns that may conflict
-	 * with ret (iow, we know in advance the incl/excl
-	 * decision for the entire directory), clear flag here without
-	 * calling clear_ce_flags_1(). That function will call
-	 * the expensive path_matches_pattern_list() on every entry.
-	 */
-	rc = clear_ce_flags_1(istate, cache, cache_end - cache,
-			      prefix,
-			      select_mask, clear_mask,
-			      pl, ret);
+	if (pl->use_cone_patterns && orig_ret == MATCHED_RECURSIVE) {
+		struct cache_entry **ce = cache;
+		rc = cache_end - cache;
+
+		while (ce < cache_end) {
+			(*ce)->ce_flags &= ~clear_mask;
+			ce++;
+		}
+	} else if (pl->use_cone_patterns && orig_ret == NOT_MATCHED) {
+		rc = cache_end - cache;
+	} else {
+		rc = clear_ce_flags_1(istate, cache, cache_end - cache,
+				      prefix,
+				      select_mask, clear_mask,
+				      pl, ret,
+				      progress_nr);
+	}
+
 	strbuf_setlen(prefix, prefix->len - 1);
 	return rc;
 }
@@ -1334,9 +1349,10 @@ static int clear_ce_flags_1(struct index_state *istate,
 			    struct strbuf *prefix,
 			    int select_mask, int clear_mask,
 			    struct pattern_list *pl,
-			    enum pattern_match_result default_match)
+			    enum pattern_match_result default_match,
+			    int progress_nr)
 {
-	struct cache_entry **cache_end = cache + nr;
+	struct cache_entry **cache_end = nr ? cache + nr : cache;
 
 	/*
 	 * Process all entries that have the given prefix and meet
@@ -1348,8 +1364,11 @@ static int clear_ce_flags_1(struct index_state *istate,
 		int len, dtype;
 		enum pattern_match_result ret;
 
+		display_progress(istate->progress, progress_nr);
+
 		if (select_mask && !(ce->ce_flags & select_mask)) {
 			cache++;
+			progress_nr++;
 			continue;
 		}
 
@@ -1370,20 +1389,26 @@ static int clear_ce_flags_1(struct index_state *istate,
 						       prefix,
 						       prefix->buf + prefix->len - len,
 						       select_mask, clear_mask,
-						       pl, default_match);
+						       pl, default_match,
+						       progress_nr);
 
 			/* clear_c_f_dir eats a whole dir already? */
 			if (processed) {
 				cache += processed;
+				progress_nr += processed;
 				strbuf_setlen(prefix, prefix->len - len);
 				continue;
 			}
 
 			strbuf_addch(prefix, '/');
-			cache += clear_ce_flags_1(istate, cache, cache_end - cache,
-						  prefix,
-						  select_mask, clear_mask, pl,
-						  default_match);
+			processed = clear_ce_flags_1(istate, cache, cache_end - cache,
+						     prefix,
+						     select_mask, clear_mask, pl,
+						     default_match, progress_nr);
+
+			cache += processed;
+			progress_nr += processed;
+
 			strbuf_setlen(prefix, prefix->len - len - 1);
 			continue;
 		}
@@ -1395,27 +1420,44 @@ static int clear_ce_flags_1(struct index_state *istate,
 						name, &dtype, pl, istate);
 		if (ret == UNDECIDED)
 			ret = default_match;
-		if (ret == MATCHED)
+		if (ret == MATCHED || ret == MATCHED_RECURSIVE)
 			ce->ce_flags &= ~clear_mask;
 		cache++;
+		progress_nr++;
 	}
+
+	display_progress(istate->progress, progress_nr);
 	return nr - (cache_end - cache);
 }
 
 static int clear_ce_flags(struct index_state *istate,
 			  int select_mask, int clear_mask,
-			  struct pattern_list *pl)
+			  struct pattern_list *pl,
+			  int show_progress)
 {
 	static struct strbuf prefix = STRBUF_INIT;
+	char label[100];
+	int rval;
 
 	strbuf_reset(&prefix);
-
-	return clear_ce_flags_1(istate,
+	if (show_progress)
+		istate->progress = start_delayed_progress(
+					_("Updating index flags"),
+					istate->cache_nr);
+
+	xsnprintf(label, sizeof(label), "clear_ce_flags(0x%08lx,0x%08lx)",
+		  (unsigned long)select_mask, (unsigned long)clear_mask);
+	trace2_region_enter("unpack_trees", label, the_repository);
+	rval = clear_ce_flags_1(istate,
 				istate->cache,
 				istate->cache_nr,
 				&prefix,
 				select_mask, clear_mask,
-				pl, 0);
+				pl, 0, 0);
+	trace2_region_leave("unpack_trees", label, the_repository);
+
+	stop_progress(&istate->progress);
+	return rval;
 }
 
 /*
@@ -1423,7 +1465,8 @@ static int clear_ce_flags(struct index_state *istate,
  */
 static void mark_new_skip_worktree(struct pattern_list *pl,
 				   struct index_state *istate,
-				   int select_flag, int skip_wt_flag)
+				   int select_flag, int skip_wt_flag,
+				   int show_progress)
 {
 	int i;
 
@@ -1447,7 +1490,7 @@ static void mark_new_skip_worktree(struct pattern_list *pl,
 	 * 2. Widen worktree according to sparse-checkout file.
 	 * Matched entries will have skip_wt_flag cleared (i.e. "in")
 	 */
-	clear_ce_flags(istate, select_flag, skip_wt_flag, pl);
+	clear_ce_flags(istate, select_flag, skip_wt_flag, pl, show_progress);
 }
 
 static int verify_absent(const struct cache_entry *,
@@ -1472,8 +1515,9 @@ int unpack_trees(unsigned len, struct tree_desc *t, struct unpack_trees_options
 	memset(&pl, 0, sizeof(pl));
 	if (!core_apply_sparse_checkout || !o->update)
 		o->skip_sparse_checkout = 1;
-	if (!o->skip_sparse_checkout) {
+	if (!o->skip_sparse_checkout && !o->pl) {
 		char *sparse = git_pathdup("info/sparse-checkout");
+		pl.use_cone_patterns = core_sparse_checkout_cone;
 		if (add_patterns_from_file_to_list(sparse, "", 0, &pl, NULL) < 0)
 			o->skip_sparse_checkout = 1;
 		else
@@ -1504,11 +1548,15 @@ int unpack_trees(unsigned len, struct tree_desc *t, struct unpack_trees_options
 	o->merge_size = len;
 	mark_all_ce_unused(o->src_index);
 
+	if (o->src_index->fsmonitor_last_update)
+		o->result.fsmonitor_last_update = o->src_index->fsmonitor_last_update;
+
 	/*
 	 * Sparse checkout loop #1: set NEW_SKIP_WORKTREE on existing entries
 	 */
 	if (!o->skip_sparse_checkout)
-		mark_new_skip_worktree(o->pl, o->src_index, 0, CE_NEW_SKIP_WORKTREE);
+		mark_new_skip_worktree(o->pl, o->src_index, 0,
+				       CE_NEW_SKIP_WORKTREE, o->verbose_update);
 
 	if (!dfc)
 		dfc = xcalloc(1, cache_entry_size(0));
@@ -1573,7 +1621,9 @@ int unpack_trees(unsigned len, struct tree_desc *t, struct unpack_trees_options
 		 * If the will have NEW_SKIP_WORKTREE, also set CE_SKIP_WORKTREE
 		 * so apply_sparse_checkout() won't attempt to remove it from worktree
 		 */
-		mark_new_skip_worktree(o->pl, &o->result, CE_ADDED, CE_SKIP_WORKTREE | CE_NEW_SKIP_WORKTREE);
+		mark_new_skip_worktree(o->pl, &o->result,
+				       CE_ADDED, CE_SKIP_WORKTREE | CE_NEW_SKIP_WORKTREE,
+				       o->verbose_update);
 
 		ret = 0;
 		for (i = 0; i < o->result.cache_nr; i++) {
@@ -1641,7 +1691,8 @@ int unpack_trees(unsigned len, struct tree_desc *t, struct unpack_trees_options
 
 done:
 	trace_performance_leave("unpack_trees");
-	clear_pattern_list(&pl);
+	if (!o->keep_pattern_list)
+		clear_pattern_list(&pl);
 	return ret;
 
 return_failed:
@@ -1764,9 +1815,6 @@ static void invalidate_ce_path(const struct cache_entry *ce,
 /*
  * Check that checking out ce->sha1 in subdir ce->name is not
  * going to overwrite any working files.
- *
- * Currently, git does not checkout subprojects during a superproject
- * checkout, so it is not going to overwrite anything.
  */
 static int verify_clean_submodule(const char *old_sha1,
 				  const struct cache_entry *ce,
@@ -2016,7 +2064,7 @@ static int merged_entry(const struct cache_entry *ce,
 		}
 		invalidate_ce_path(merge, o);
 
-		if (submodule_from_ce(ce)) {
+		if (submodule_from_ce(ce) && file_exists(ce->name)) {
 			int ret = check_submodule_move_head(ce, NULL,
 							    oid_to_hex(&ce->oid),
 							    o);
@@ -2045,7 +2093,7 @@ static int merged_entry(const struct cache_entry *ce,
 			invalidate_ce_path(old, o);
 		}
 
-		if (submodule_from_ce(ce)) {
+		if (submodule_from_ce(ce) && file_exists(ce->name)) {
 			int ret = check_submodule_move_head(ce, oid_to_hex(&old->oid),
 							    oid_to_hex(&ce->oid),
 							    o);
@@ -2385,7 +2433,8 @@ int oneway_merge(const struct cache_entry * const *src,
 
 	if (old && same(old, a)) {
 		int update = 0;
-		if (o->reset && o->update && !ce_uptodate(old) && !ce_skip_worktree(old)) {
+		if (o->reset && o->update && !ce_uptodate(old) && !ce_skip_worktree(old) &&
+			!(old->ce_flags & CE_FSMONITOR_VALID)) {
 			struct stat st;
 			if (lstat(old->name, &st) ||
 			    ie_match_stat(o->src_index, old, &st, CE_MATCH_IGNORE_VALID|CE_MATCH_IGNORE_SKIP_WORKTREE))