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diff --git a/t/t6044-merge-unrelated-index-changes.sh b/t/t6044-merge-unrelated-index-changes.sh
new file mode 100755
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+++ b/t/t6044-merge-unrelated-index-changes.sh
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+#!/bin/sh
+
+test_description="merges with unrelated index changes"
+
+. ./test-lib.sh
+
+# Testcase for some simple merges
+#   A
+#   o-------o B
+#    \
+#     \-----o C
+#      \
+#       \---o D
+#        \
+#         \-o E
+#          \
+#           o F
+#   Commit A: some file a
+#   Commit B: adds file b, modifies end of a
+#   Commit C: adds file c
+#   Commit D: adds file d, modifies beginning of a
+#   Commit E: renames a->subdir/a, adds subdir/e
+#   Commit F: empty commit
+
+test_expect_success 'setup trivial merges' '
+	test_seq 1 10 >a &&
+	git add a &&
+	test_tick && git commit -m A &&
+
+	git branch A &&
+	git branch B &&
+	git branch C &&
+	git branch D &&
+	git branch E &&
+	git branch F &&
+
+	git checkout B &&
+	echo b >b &&
+	echo 11 >>a &&
+	git add a b &&
+	test_tick && git commit -m B &&
+
+	git checkout C &&
+	echo c >c &&
+	git add c &&
+	test_tick && git commit -m C &&
+
+	git checkout D &&
+	test_seq 2 10 >a &&
+	echo d >d &&
+	git add a d &&
+	test_tick && git commit -m D &&
+
+	git checkout E &&
+	mkdir subdir &&
+	git mv a subdir/a &&
+	echo e >subdir/e &&
+	git add subdir &&
+	test_tick && git commit -m E &&
+
+	git checkout F &&
+	test_tick && git commit --allow-empty -m F
+'
+
+test_expect_success 'ff update' '
+	git reset --hard &&
+	git checkout A^0 &&
+
+	touch random_file && git add random_file &&
+
+	git merge E^0 &&
+
+	test_must_fail git rev-parse HEAD:random_file &&
+	test "$(git diff --name-only --cached E)" = "random_file"
+'
+
+test_expect_success 'ff update, important file modified' '
+	git reset --hard &&
+	git checkout A^0 &&
+
+	mkdir subdir &&
+	touch subdir/e &&
+	git add subdir/e &&
+
+	test_must_fail git merge E^0
+'
+
+test_expect_success 'resolve, trivial' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	touch random_file && git add random_file &&
+
+	test_must_fail git merge -s resolve C^0
+'
+
+test_expect_success 'resolve, non-trivial' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	touch random_file && git add random_file &&
+
+	test_must_fail git merge -s resolve D^0
+'
+
+test_expect_success 'recursive' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	touch random_file && git add random_file &&
+
+	test_must_fail git merge -s recursive C^0
+'
+
+test_expect_success 'recursive, when merge branch matches merge base' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	touch random_file && git add random_file &&
+
+	test_must_fail git merge -s recursive F^0
+'
+
+test_expect_success 'octopus, unrelated file touched' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	touch random_file && git add random_file &&
+
+	test_must_fail git merge C^0 D^0
+'
+
+test_expect_success 'octopus, related file removed' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	git rm b &&
+
+	test_must_fail git merge C^0 D^0
+'
+
+test_expect_success 'octopus, related file modified' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	echo 12 >>a && git add a &&
+
+	test_must_fail git merge C^0 D^0
+'
+
+test_expect_success 'ours' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	touch random_file && git add random_file &&
+
+	test_must_fail git merge -s ours C^0
+'
+
+test_expect_success 'subtree' '
+	git reset --hard &&
+	git checkout B^0 &&
+
+	touch random_file && git add random_file &&
+
+	test_must_fail git merge -s subtree E^0
+'
+
+test_done