1 files changed, 322 insertions, 135 deletions

diff --git a/builtin/clone.c b/builtin/clone.c
index e18839d107..743f16ae2a 100644
--- a/builtin/clone.c
+++ b/builtin/clone.c
@@ -39,17 +39,39 @@ static const char * const builtin_clone_usage[] = {
 };
 
 static int option_no_checkout, option_bare, option_mirror, option_single_branch = -1;
-static int option_local = -1, option_no_hardlinks, option_shared, option_recursive;
-static char *option_template, *option_depth;
+static int option_local = -1, option_no_hardlinks, option_shared;
+static int option_no_tags;
+static int option_shallow_submodules;
+static int deepen;
+static char *option_template, *option_depth, *option_since;
 static char *option_origin = NULL;
 static char *option_branch = NULL;
+static struct string_list option_not = STRING_LIST_INIT_NODUP;
 static const char *real_git_dir;
 static char *option_upload_pack = "git-upload-pack";
 static int option_verbosity;
 static int option_progress = -1;
-static struct string_list option_config;
-static struct string_list option_reference;
+static enum transport_family family;
+static struct string_list option_config = STRING_LIST_INIT_NODUP;
+static struct string_list option_required_reference = STRING_LIST_INIT_NODUP;
+static struct string_list option_optional_reference = STRING_LIST_INIT_NODUP;
 static int option_dissociate;
+static int max_jobs = -1;
+static struct string_list option_recurse_submodules = STRING_LIST_INIT_NODUP;
+
+static int recurse_submodules_cb(const struct option *opt,
+				 const char *arg, int unset)
+{
+	if (unset)
+		string_list_clear((struct string_list *)opt->value, 0);
+	else if (arg)
+		string_list_append((struct string_list *)opt->value, arg);
+	else
+		string_list_append((struct string_list *)opt->value,
+				   (const char *)opt->defval);
+
+	return 0;
+}
 
 static struct option builtin_clone_options[] = {
 	OPT__VERBOSITY(&option_verbosity),
@@ -68,14 +90,21 @@ static struct option builtin_clone_options[] = {
 		    N_("don't use local hardlinks, always copy")),
 	OPT_BOOL('s', "shared", &option_shared,
 		    N_("setup as shared repository")),
-	OPT_BOOL(0, "recursive", &option_recursive,
-		    N_("initialize submodules in the clone")),
-	OPT_BOOL(0, "recurse-submodules", &option_recursive,
-		    N_("initialize submodules in the clone")),
+	{ OPTION_CALLBACK, 0, "recursive", &option_recurse_submodules,
+	  N_("pathspec"), N_("initialize submodules in the clone"),
+	  PARSE_OPT_OPTARG | PARSE_OPT_HIDDEN, recurse_submodules_cb,
+	  (intptr_t)"." },
+	{ OPTION_CALLBACK, 0, "recurse-submodules", &option_recurse_submodules,
+	  N_("pathspec"), N_("initialize submodules in the clone"),
+	  PARSE_OPT_OPTARG, recurse_submodules_cb, (intptr_t)"." },
+	OPT_INTEGER('j', "jobs", &max_jobs,
+		    N_("number of submodules cloned in parallel")),
 	OPT_STRING(0, "template", &option_template, N_("template-directory"),
 		   N_("directory from which templates will be used")),
-	OPT_STRING_LIST(0, "reference", &option_reference, N_("repo"),
+	OPT_STRING_LIST(0, "reference", &option_required_reference, N_("repo"),
 			N_("reference repository")),
+	OPT_STRING_LIST(0, "reference-if-able", &option_optional_reference,
+			N_("repo"), N_("reference repository")),
 	OPT_BOOL(0, "dissociate", &option_dissociate,
 		 N_("use --reference only while cloning")),
 	OPT_STRING('o', "origin", &option_origin, N_("name"),
@@ -86,95 +115,161 @@ static struct option builtin_clone_options[] = {
 		   N_("path to git-upload-pack on the remote")),
 	OPT_STRING(0, "depth", &option_depth, N_("depth"),
 		    N_("create a shallow clone of that depth")),
+	OPT_STRING(0, "shallow-since", &option_since, N_("time"),
+		    N_("create a shallow clone since a specific time")),
+	OPT_STRING_LIST(0, "shallow-exclude", &option_not, N_("revision"),
+			N_("deepen history of shallow clone, excluding rev")),
 	OPT_BOOL(0, "single-branch", &option_single_branch,
 		    N_("clone only one branch, HEAD or --branch")),
+	OPT_BOOL(0, "no-tags", &option_no_tags,
+		 N_("don't clone any tags, and make later fetches not to follow them")),
+	OPT_BOOL(0, "shallow-submodules", &option_shallow_submodules,
+		    N_("any cloned submodules will be shallow")),
 	OPT_STRING(0, "separate-git-dir", &real_git_dir, N_("gitdir"),
 		   N_("separate git dir from working tree")),
 	OPT_STRING_LIST('c', "config", &option_config, N_("key=value"),
 			N_("set config inside the new repository")),
+	OPT_SET_INT('4', "ipv4", &family, N_("use IPv4 addresses only"),
+			TRANSPORT_FAMILY_IPV4),
+	OPT_SET_INT('6', "ipv6", &family, N_("use IPv6 addresses only"),
+			TRANSPORT_FAMILY_IPV6),
 	OPT_END()
 };
 
-static const char *argv_submodule[] = {
-	"submodule", "update", "--init", "--recursive", NULL
-};
-
-static char *get_repo_path(const char *repo, int *is_bundle)
+static const char *get_repo_path_1(struct strbuf *path, int *is_bundle)
 {
 	static char *suffix[] = { "/.git", "", ".git/.git", ".git" };
 	static char *bundle_suffix[] = { ".bundle", "" };
+	size_t baselen = path->len;
 	struct stat st;
 	int i;
 
 	for (i = 0; i < ARRAY_SIZE(suffix); i++) {
-		const char *path;
-		path = mkpath("%s%s", repo, suffix[i]);
-		if (stat(path, &st))
+		strbuf_setlen(path, baselen);
+		strbuf_addstr(path, suffix[i]);
+		if (stat(path->buf, &st))
 			continue;
-		if (S_ISDIR(st.st_mode) && is_git_directory(path)) {
+		if (S_ISDIR(st.st_mode) && is_git_directory(path->buf)) {
 			*is_bundle = 0;
-			return xstrdup(absolute_path(path));
+			return path->buf;
 		} else if (S_ISREG(st.st_mode) && st.st_size > 8) {
 			/* Is it a "gitfile"? */
 			char signature[8];
-			int len, fd = open(path, O_RDONLY);
+			const char *dst;
+			int len, fd = open(path->buf, O_RDONLY);
 			if (fd < 0)
 				continue;
 			len = read_in_full(fd, signature, 8);
 			close(fd);
 			if (len != 8 || strncmp(signature, "gitdir: ", 8))
 				continue;
-			path = read_gitfile(path);
-			if (path) {
+			dst = read_gitfile(path->buf);
+			if (dst) {
 				*is_bundle = 0;
-				return xstrdup(absolute_path(path));
+				return dst;
 			}
 		}
 	}
 
 	for (i = 0; i < ARRAY_SIZE(bundle_suffix); i++) {
-		const char *path;
-		path = mkpath("%s%s", repo, bundle_suffix[i]);
-		if (!stat(path, &st) && S_ISREG(st.st_mode)) {
+		strbuf_setlen(path, baselen);
+		strbuf_addstr(path, bundle_suffix[i]);
+		if (!stat(path->buf, &st) && S_ISREG(st.st_mode)) {
 			*is_bundle = 1;
-			return xstrdup(absolute_path(path));
+			return path->buf;
 		}
 	}
 
 	return NULL;
 }
 
+static char *get_repo_path(const char *repo, int *is_bundle)
+{
+	struct strbuf path = STRBUF_INIT;
+	const char *raw;
+	char *canon;
+
+	strbuf_addstr(&path, repo);
+	raw = get_repo_path_1(&path, is_bundle);
+	canon = raw ? absolute_pathdup(raw) : NULL;
+	strbuf_release(&path);
+	return canon;
+}
+
 static char *guess_dir_name(const char *repo, int is_bundle, int is_bare)
 {
-	const char *end = repo + strlen(repo), *start;
+	const char *end = repo + strlen(repo), *start, *ptr;
 	size_t len;
 	char *dir;
 
 	/*
+	 * Skip scheme.
+	 */
+	start = strstr(repo, "://");
+	if (start == NULL)
+		start = repo;
+	else
+		start += 3;
+
+	/*
+	 * Skip authentication data. The stripping does happen
+	 * greedily, such that we strip up to the last '@' inside
+	 * the host part.
+	 */
+	for (ptr = start; ptr < end && !is_dir_sep(*ptr); ptr++) {
+		if (*ptr == '@')
+			start = ptr + 1;
+	}
+
+	/*
 	 * Strip trailing spaces, slashes and /.git
 	 */
-	while (repo < end && (is_dir_sep(end[-1]) || isspace(end[-1])))
+	while (start < end && (is_dir_sep(end[-1]) || isspace(end[-1])))
 		end--;
-	if (end - repo > 5 && is_dir_sep(end[-5]) &&
+	if (end - start > 5 && is_dir_sep(end[-5]) &&
 	    !strncmp(end - 4, ".git", 4)) {
 		end -= 5;
-		while (repo < end && is_dir_sep(end[-1]))
+		while (start < end && is_dir_sep(end[-1]))
 			end--;
 	}
 
 	/*
-	 * Find last component, but be prepared that repo could have
-	 * the form  "remote.example.com:foo.git", i.e. no slash
-	 * in the directory part.
+	 * Strip trailing port number if we've got only a
+	 * hostname (that is, there is no dir separator but a
+	 * colon). This check is required such that we do not
+	 * strip URI's like '/foo/bar:2222.git', which should
+	 * result in a dir '2222' being guessed due to backwards
+	 * compatibility.
+	 */
+	if (memchr(start, '/', end - start) == NULL
+	    && memchr(start, ':', end - start) != NULL) {
+		ptr = end;
+		while (start < ptr && isdigit(ptr[-1]) && ptr[-1] != ':')
+			ptr--;
+		if (start < ptr && ptr[-1] == ':')
+			end = ptr - 1;
+	}
+
+	/*
+	 * Find last component. To remain backwards compatible we
+	 * also regard colons as path separators, such that
+	 * cloning a repository 'foo:bar.git' would result in a
+	 * directory 'bar' being guessed.
 	 */
-	start = end;
-	while (repo < start && !is_dir_sep(start[-1]) && start[-1] != ':')
-		start--;
+	ptr = end;
+	while (start < ptr && !is_dir_sep(ptr[-1]) && ptr[-1] != ':')
+		ptr--;
+	start = ptr;
 
 	/*
 	 * Strip .{bundle,git}.
 	 */
-	strip_suffix(start, is_bundle ? ".bundle" : ".git" , &len);
+	len = end - start;
+	strip_suffix_mem(start, &len, is_bundle ? ".bundle" : ".git");
+
+	if (!len || (len == 1 && *start == '/'))
+		die(_("No directory name could be guessed.\n"
+		      "Please specify a directory on the command line"));
 
 	if (is_bare)
 		dir = xstrfmt("%.*s.git", (int)len, start);
@@ -217,45 +312,37 @@ static void strip_trailing_slashes(char *dir)
 
 static int add_one_reference(struct string_list_item *item, void *cb_data)
 {
-	char *ref_git;
-	const char *repo;
-	struct strbuf alternate = STRBUF_INIT;
-
-	/* Beware: read_gitfile(), real_path() and mkpath() return static buffer */
-	ref_git = xstrdup(real_path(item->string));
-
-	repo = read_gitfile(ref_git);
-	if (!repo)
-		repo = read_gitfile(mkpath("%s/.git", ref_git));
-	if (repo) {
-		free(ref_git);
-		ref_git = xstrdup(repo);
-	}
-
-	if (!repo && is_directory(mkpath("%s/.git/objects", ref_git))) {
-		char *ref_git_git = mkpathdup("%s/.git", ref_git);
-		free(ref_git);
-		ref_git = ref_git_git;
-	} else if (!is_directory(mkpath("%s/objects", ref_git)))
-		die(_("reference repository '%s' is not a local repository."),
-		    item->string);
-
-	if (!access(mkpath("%s/shallow", ref_git), F_OK))
-		die(_("reference repository '%s' is shallow"), item->string);
-
-	if (!access(mkpath("%s/info/grafts", ref_git), F_OK))
-		die(_("reference repository '%s' is grafted"), item->string);
-
-	strbuf_addf(&alternate, "%s/objects", ref_git);
-	add_to_alternates_file(alternate.buf);
-	strbuf_release(&alternate);
+	struct strbuf err = STRBUF_INIT;
+	int *required = cb_data;
+	char *ref_git = compute_alternate_path(item->string, &err);
+
+	if (!ref_git) {
+		if (*required)
+			die("%s", err.buf);
+		else
+			fprintf(stderr,
+				_("info: Could not add alternate for '%s': %s\n"),
+				item->string, err.buf);
+	} else {
+		struct strbuf sb = STRBUF_INIT;
+		strbuf_addf(&sb, "%s/objects", ref_git);
+		add_to_alternates_file(sb.buf);
+		strbuf_release(&sb);
+	}
+
+	strbuf_release(&err);
 	free(ref_git);
 	return 0;
 }
 
 static void setup_reference(void)
 {
-	for_each_string_list(&option_reference, add_one_reference, NULL);
+	int required = 1;
+	for_each_string_list(&option_required_reference,
+			     add_one_reference, &required);
+	required = 0;
+	for_each_string_list(&option_optional_reference,
+			     add_one_reference, &required);
 }
 
 static void copy_alternates(struct strbuf *src, struct strbuf *dst,
@@ -276,17 +363,21 @@ static void copy_alternates(struct strbuf *src, struct strbuf *dst,
 	FILE *in = fopen(src->buf, "r");
 	struct strbuf line = STRBUF_INIT;
 
-	while (strbuf_getline(&line, in, '\n') != EOF) {
-		char *abs_path, abs_buf[PATH_MAX];
+	while (strbuf_getline(&line, in) != EOF) {
+		char *abs_path;
 		if (!line.len || line.buf[0] == '#')
 			continue;
 		if (is_absolute_path(line.buf)) {
 			add_to_alternates_file(line.buf);
 			continue;
 		}
-		abs_path = mkpath("%s/objects/%s", src_repo, line.buf);
-		normalize_path_copy(abs_buf, abs_path);
-		add_to_alternates_file(abs_buf);
+		abs_path = mkpathdup("%s/objects/%s", src_repo, line.buf);
+		if (!normalize_path_copy(abs_path, abs_path))
+			add_to_alternates_file(abs_path);
+		else
+			warning("skipping invalid relative alternate: %s/%s",
+				src_repo, line.buf);
+		free(abs_path);
 	}
 	strbuf_release(&line);
 	fclose(in);
@@ -365,8 +456,10 @@ static void clone_local(const char *src_repo, const char *dest_repo)
 	} else {
 		struct strbuf src = STRBUF_INIT;
 		struct strbuf dest = STRBUF_INIT;
-		strbuf_addf(&src, "%s/objects", src_repo);
-		strbuf_addf(&dest, "%s/objects", dest_repo);
+		get_common_dir(&src, src_repo);
+		get_common_dir(&dest, dest_repo);
+		strbuf_addstr(&src, "/objects");
+		strbuf_addstr(&dest, "/objects");
 		copy_or_link_directory(&src, &dest, src_repo, src.len);
 		strbuf_release(&src);
 		strbuf_release(&dest);
@@ -473,7 +566,7 @@ static struct ref *wanted_peer_refs(const struct ref *refs,
 	} else
 		get_fetch_map(refs, refspec, &tail, 0);
 
-	if (!option_mirror && !option_single_branch)
+	if (!option_mirror && !option_single_branch && !option_no_tags)
 		get_fetch_map(refs, tag_refspec, &tail, 0);
 
 	return local_refs;
@@ -483,16 +576,26 @@ static void write_remote_refs(const struct ref *local_refs)
 {
 	const struct ref *r;
 
-	lock_packed_refs(LOCK_DIE_ON_ERROR);
+	struct ref_transaction *t;
+	struct strbuf err = STRBUF_INIT;
+
+	t = ref_transaction_begin(&err);
+	if (!t)
+		die("%s", err.buf);
 
 	for (r = local_refs; r; r = r->next) {
 		if (!r->peer_ref)
 			continue;
-		add_packed_ref(r->peer_ref->name, r->old_sha1);
+		if (ref_transaction_create(t, r->peer_ref->name, r->old_oid.hash,
+					   0, NULL, &err))
+			die("%s", err.buf);
 	}
 
-	if (commit_packed_refs())
-		die_errno("unable to overwrite old ref-pack file");
+	if (initial_ref_transaction_commit(t, &err))
+		die("%s", err.buf);
+
+	strbuf_release(&err);
+	ref_transaction_free(t);
 }
 
 static void write_followtags(const struct ref *refs, const char *msg)
@@ -503,9 +606,9 @@ static void write_followtags(const struct ref *refs, const char *msg)
 			continue;
 		if (ends_with(ref->name, "^{}"))
 			continue;
-		if (!has_sha1_file(ref->old_sha1))
+		if (!has_object_file(&ref->old_oid))
 			continue;
-		update_ref(msg, ref->name, ref->old_sha1,
+		update_ref(msg, ref->name, ref->old_oid.hash,
 			   NULL, 0, UPDATE_REFS_DIE_ON_ERR);
 	}
 }
@@ -525,7 +628,7 @@ static int iterate_ref_map(void *cb_data, unsigned char sha1[20])
 	if (!ref)
 		return -1;
 
-	hashcpy(sha1, ref->old_sha1);
+	hashcpy(sha1, ref->old_oid.hash);
 	*rm = ref->next;
 	return 0;
 }
@@ -541,18 +644,18 @@ static void update_remote_refs(const struct ref *refs,
 	const struct ref *rm = mapped_refs;
 
 	if (check_connectivity) {
-		if (transport->progress)
-			fprintf(stderr, _("Checking connectivity... "));
-		if (check_everything_connected_with_transport(iterate_ref_map,
-							      0, &rm, transport))
+		struct check_connected_options opt = CHECK_CONNECTED_INIT;
+
+		opt.transport = transport;
+		opt.progress = transport->progress;
+
+		if (check_connected(iterate_ref_map, &rm, &opt))
 			die(_("remote did not send all necessary objects"));
-		if (transport->progress)
-			fprintf(stderr, _("done.\n"));
 	}
 
 	if (refs) {
 		write_remote_refs(mapped_refs);
-		if (option_single_branch)
+		if (option_single_branch && !option_no_tags)
 			write_followtags(refs, msg);
 	}
 
@@ -560,9 +663,11 @@ static void update_remote_refs(const struct ref *refs,
 		struct strbuf head_ref = STRBUF_INIT;
 		strbuf_addstr(&head_ref, branch_top);
 		strbuf_addstr(&head_ref, "HEAD");
-		create_symref(head_ref.buf,
-			      remote_head_points_at->peer_ref->name,
-			      msg);
+		if (create_symref(head_ref.buf,
+				  remote_head_points_at->peer_ref->name,
+				  msg) < 0)
+			die(_("unable to update %s"), head_ref.buf);
+		strbuf_release(&head_ref);
 	}
 }
 
@@ -572,16 +677,17 @@ static void update_head(const struct ref *our, const struct ref *remote,
 	const char *head;
 	if (our && skip_prefix(our->name, "refs/heads/", &head)) {
 		/* Local default branch link */
-		create_symref("HEAD", our->name, NULL);
+		if (create_symref("HEAD", our->name, NULL) < 0)
+			die(_("unable to update HEAD"));
 		if (!option_bare) {
-			update_ref(msg, "HEAD", our->old_sha1, NULL, 0,
+			update_ref(msg, "HEAD", our->old_oid.hash, NULL, 0,
 				   UPDATE_REFS_DIE_ON_ERR);
 			install_branch_config(0, head, option_origin, our->name);
 		}
 	} else if (our) {
-		struct commit *c = lookup_commit_reference(our->old_sha1);
+		struct commit *c = lookup_commit_reference(&our->old_oid);
 		/* --branch specifies a non-branch (i.e. tags), detach HEAD */
-		update_ref(msg, "HEAD", c->object.sha1,
+		update_ref(msg, "HEAD", c->object.oid.hash,
 			   NULL, REF_NODEREF, UPDATE_REFS_DIE_ON_ERR);
 	} else if (remote) {
 		/*
@@ -589,14 +695,14 @@ static void update_head(const struct ref *our, const struct ref *remote,
 		 * HEAD points to a branch but we don't know which one.
 		 * Detach HEAD in all these cases.
 		 */
-		update_ref(msg, "HEAD", remote->old_sha1,
+		update_ref(msg, "HEAD", remote->old_oid.hash,
 			   NULL, REF_NODEREF, UPDATE_REFS_DIE_ON_ERR);
 	}
 }
 
-static int checkout(void)
+static int checkout(int submodule_progress)
 {
-	unsigned char sha1[20];
+	struct object_id oid;
 	char *head;
 	struct lock_file *lock_file;
 	struct unpack_trees_options opts;
@@ -607,7 +713,7 @@ static int checkout(void)
 	if (option_no_checkout)
 		return 0;
 
-	head = resolve_refdup("HEAD", RESOLVE_REF_READING, sha1, NULL);
+	head = resolve_refdup("HEAD", RESOLVE_REF_READING, oid.hash, NULL);
 	if (!head) {
 		warning(_("remote HEAD refers to nonexistent ref, "
 			  "unable to checkout.\n"));
@@ -615,7 +721,7 @@ static int checkout(void)
 	}
 	if (!strcmp(head, "HEAD")) {
 		if (advice_detached_head)
-			detach_advice(sha1_to_hex(sha1));
+			detach_advice(oid_to_hex(&oid));
 	} else {
 		if (!starts_with(head, "refs/heads/"))
 			die(_("HEAD not found below refs/heads!"));
@@ -626,7 +732,7 @@ static int checkout(void)
 	setup_work_tree();
 
 	lock_file = xcalloc(1, sizeof(struct lock_file));
-	hold_locked_index(lock_file, 1);
+	hold_locked_index(lock_file, LOCK_DIE_ON_ERROR);
 
 	memset(&opts, 0, sizeof opts);
 	opts.update = 1;
@@ -636,7 +742,7 @@ static int checkout(void)
 	opts.src_index = &the_index;
 	opts.dst_index = &the_index;
 
-	tree = parse_tree_indirect(sha1);
+	tree = parse_tree_indirect(&oid);
 	parse_tree(tree);
 	init_tree_desc(&t, tree->buffer, tree->size);
 	if (unpack_trees(1, &t, &opts) < 0)
@@ -646,17 +752,33 @@ static int checkout(void)
 		die(_("unable to write new index file"));
 
 	err |= run_hook_le(NULL, "post-checkout", sha1_to_hex(null_sha1),
-			   sha1_to_hex(sha1), "1", NULL);
+			   oid_to_hex(&oid), "1", NULL);
+
+	if (!err && (option_recurse_submodules.nr > 0)) {
+		struct argv_array args = ARGV_ARRAY_INIT;
+		argv_array_pushl(&args, "submodule", "update", "--init", "--recursive", NULL);
 
-	if (!err && option_recursive)
-		err = run_command_v_opt(argv_submodule, RUN_GIT_CMD);
+		if (option_shallow_submodules == 1)
+			argv_array_push(&args, "--depth=1");
+
+		if (max_jobs != -1)
+			argv_array_pushf(&args, "--jobs=%d", max_jobs);
+
+		if (submodule_progress)
+			argv_array_push(&args, "--progress");
+
+		err = run_command_v_opt(args.argv, RUN_GIT_CMD);
+		argv_array_clear(&args);
+	}
 
 	return err;
 }
 
 static int write_one_config(const char *key, const char *value, void *data)
 {
-	return git_config_set_multivar(key, value ? value : "true", "^$", 0);
+	return git_config_set_multivar_gently(key,
+					      value ? value : "true",
+					      CONFIG_REGEX_NONE, 0);
 }
 
 static void write_config(struct string_list *config)
@@ -666,7 +788,7 @@ static void write_config(struct string_list *config)
 	for (i = 0; i < config->nr; i++) {
 		if (git_config_parse_parameter(config->items[i].string,
 					       write_one_config, NULL) < 0)
-			die("unable to write parameters to config file");
+			die(_("unable to write parameters to config file"));
 	}
 }
 
@@ -725,11 +847,15 @@ static void write_refspec_config(const char *src_ref_prefix,
 static void dissociate_from_references(void)
 {
 	static const char* argv[] = { "repack", "-a", "-d", NULL };
+	char *alternates = git_pathdup("objects/info/alternates");
 
-	if (run_command_v_opt(argv, RUN_GIT_CMD|RUN_COMMAND_NO_STDIN))
-		die(_("cannot repack to clean up"));
-	if (unlink(git_path("objects/info/alternates")) && errno != ENOENT)
-		die_errno(_("cannot unlink temporary alternates file"));
+	if (!access(alternates, F_OK)) {
+		if (run_command_v_opt(argv, RUN_GIT_CMD|RUN_COMMAND_NO_STDIN))
+			die(_("cannot repack to clean up"));
+		if (unlink(alternates) && errno != ENOENT)
+			die_errno(_("cannot unlink temporary alternates file"));
+	}
+	free(alternates);
 }
 
 int cmd_clone(int argc, const char **argv, const char *prefix)
@@ -750,6 +876,7 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 	const char *src_ref_prefix = "refs/heads/";
 	struct remote *remote;
 	int err = 0, complete_refs_before_fetch = 1;
+	int submodule_progress;
 
 	struct refspec *refspec;
 	const char *fetch_pattern;
@@ -766,8 +893,10 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 		usage_msg_opt(_("You must specify a repository to clone."),
 			builtin_clone_usage, builtin_clone_options);
 
+	if (option_depth || option_since || option_not.nr)
+		deepen = 1;
 	if (option_single_branch == -1)
-		option_single_branch = option_depth ? 1 : 0;
+		option_single_branch = deepen ? 1 : 0;
 
 	if (option_mirror)
 		option_bare = 1;
@@ -788,7 +917,7 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 
 	path = get_repo_path(repo_name, &is_bundle);
 	if (path)
-		repo = xstrdup(absolute_path(repo_name));
+		repo = absolute_pathdup(repo_name);
 	else if (!strchr(repo_name, ':'))
 		die(_("repository '%s' does not exist"), repo_name);
 	else
@@ -840,23 +969,58 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 		set_git_work_tree(work_tree);
 	}
 
-	junk_git_dir = git_dir;
+	junk_git_dir = real_git_dir ? real_git_dir : git_dir;
 	if (safe_create_leading_directories_const(git_dir) < 0)
 		die(_("could not create leading directories of '%s'"), git_dir);
 
-	set_git_dir_init(git_dir, real_git_dir, 0);
-	if (real_git_dir) {
-		git_dir = real_git_dir;
-		junk_git_dir = real_git_dir;
-	}
-
 	if (0 <= option_verbosity) {
 		if (option_bare)
 			fprintf(stderr, _("Cloning into bare repository '%s'...\n"), dir);
 		else
 			fprintf(stderr, _("Cloning into '%s'...\n"), dir);
 	}
-	init_db(option_template, INIT_DB_QUIET);
+
+	if (option_recurse_submodules.nr > 0) {
+		struct string_list_item *item;
+		struct strbuf sb = STRBUF_INIT;
+
+		/* remove duplicates */
+		string_list_sort(&option_recurse_submodules);
+		string_list_remove_duplicates(&option_recurse_submodules, 0);
+
+		/*
+		 * NEEDSWORK: In a multi-working-tree world, this needs to be
+		 * set in the per-worktree config.
+		 */
+		for_each_string_list_item(item, &option_recurse_submodules) {
+			strbuf_addf(&sb, "submodule.active=%s",
+				    item->string);
+			string_list_append(&option_config,
+					   strbuf_detach(&sb, NULL));
+		}
+
+		if (option_required_reference.nr &&
+		    option_optional_reference.nr)
+			die(_("clone --recursive is not compatible with "
+			      "both --reference and --reference-if-able"));
+		else if (option_required_reference.nr) {
+			string_list_append(&option_config,
+				"submodule.alternateLocation=superproject");
+			string_list_append(&option_config,
+				"submodule.alternateErrorStrategy=die");
+		} else if (option_optional_reference.nr) {
+			string_list_append(&option_config,
+				"submodule.alternateLocation=superproject");
+			string_list_append(&option_config,
+				"submodule.alternateErrorStrategy=info");
+		}
+	}
+
+	init_db(git_dir, real_git_dir, option_template, INIT_DB_QUIET);
+
+	if (real_git_dir)
+		git_dir = real_git_dir;
+
 	write_config(&option_config);
 
 	git_config(git_default_config, NULL);
@@ -876,13 +1040,15 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 	git_config_set(key.buf, repo);
 	strbuf_reset(&key);
 
-	if (option_reference.nr)
-		setup_reference();
-	else if (option_dissociate) {
-		warning(_("--dissociate given, but there is no --reference"));
-		option_dissociate = 0;
+	if (option_no_tags) {
+		strbuf_addf(&key, "remote.%s.tagOpt", option_origin);
+		git_config_set(key.buf, "--no-tags");
+		strbuf_reset(&key);
 	}
 
+	if (option_required_reference.nr || option_optional_reference.nr)
+		setup_reference();
+
 	fetch_pattern = value.buf;
 	refspec = parse_fetch_refspec(1, &fetch_pattern);
 
@@ -891,12 +1057,17 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 	remote = remote_get(option_origin);
 	transport = transport_get(remote, remote->url[0]);
 	transport_set_verbosity(transport, option_verbosity, option_progress);
+	transport->family = family;
 
 	path = get_repo_path(remote->url[0], &is_bundle);
 	is_local = option_local != 0 && path && !is_bundle;
 	if (is_local) {
 		if (option_depth)
 			warning(_("--depth is ignored in local clones; use file:// instead."));
+		if (option_since)
+			warning(_("--shallow-since is ignored in local clones; use file:// instead."));
+		if (option_not.nr)
+			warning(_("--shallow-exclude is ignored in local clones; use file:// instead."));
 		if (!access(mkpath("%s/shallow", path), F_OK)) {
 			if (option_local > 0)
 				warning(_("source repository is shallow, ignoring --local"));
@@ -915,6 +1086,12 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 	if (option_depth)
 		transport_set_option(transport, TRANS_OPT_DEPTH,
 				     option_depth);
+	if (option_since)
+		transport_set_option(transport, TRANS_OPT_DEEPEN_SINCE,
+				     option_since);
+	if (option_not.nr)
+		transport_set_option(transport, TRANS_OPT_DEEPEN_NOT,
+				     (const char *)&option_not);
 	if (option_single_branch)
 		transport_set_option(transport, TRANS_OPT_FOLLOWTAGS, "1");
 
@@ -922,7 +1099,7 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 		transport_set_option(transport, TRANS_OPT_UPLOADPACK,
 				     option_upload_pack);
 
-	if (transport->smart_options && !option_depth)
+	if (transport->smart_options && !deepen)
 		transport->smart_options->check_self_contained_and_connected = 1;
 
 	refs = transport_get_remote_refs(transport);
@@ -940,7 +1117,7 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 		 * remote HEAD check.
 		 */
 		for (ref = refs; ref; ref = ref->next)
-			if (is_null_sha1(ref->old_sha1)) {
+			if (is_null_oid(&ref->old_oid)) {
 				complete_refs_before_fetch = 0;
 				break;
 			}
@@ -992,14 +1169,24 @@ int cmd_clone(int argc, const char **argv, const char *prefix)
 
 	update_head(our_head_points_at, remote_head, reflog_msg.buf);
 
+	/*
+	 * We want to show progress for recursive submodule clones iff
+	 * we did so for the main clone. But only the transport knows
+	 * the final decision for this flag, so we need to rescue the value
+	 * before we free the transport.
+	 */
+	submodule_progress = transport->progress;
+
 	transport_unlock_pack(transport);
 	transport_disconnect(transport);
 
-	if (option_dissociate)
+	if (option_dissociate) {
+		close_all_packs();
 		dissociate_from_references();
+	}
 
 	junk_mode = JUNK_LEAVE_REPO;
-	err = checkout();
+	err = checkout(submodule_progress);
 
 	strbuf_release(&reflog_msg);
 	strbuf_release(&branch_top);