dir: hide untracked contents of untracked dirs

When we taught read_directory_recursive() to recurse into untracked
directories in search of ignored files given DIR_SHOW_IGNORED_TOO, that
had the side effect of teaching it to collect the untracked contents of
untracked directories. It doesn't always make sense to return these,
though (we do need them for `clean -d`), so we introduce a flag
(DIR_KEEP_UNTRACKED_CONTENTS) to control whether or not read_directory()
strips dir->entries of the untracked contents of untracked dirs.

We also introduce check_contains() to check if one dir_entry corresponds
to a path which contains the path corresponding to another dir_entry.

This also fixes known breakages in t7061, since status --ignored now
searches untracked directories for ignored files.

Signed-off-by: Samuel Lijin <sxlijin@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>

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